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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr036818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 146aa MW: 16576.2 Da PI: 11.5527 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 17 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+ Ed ll+++++ +G g+W++ ++ g+ R++k+ck+rw + Pbr036818.1 17 RGSWTAREDNLLIQYINSHGEGRWSSLPENAGLLRCGKSCKLRWMNN 63 89******************************99**********997 PP | |||||||
2 | Myb_DNA-binding | 46.1 | 1.2e-14 | 74 | 114 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++ +el+++++++lG++ W++Ia +++ gRt++++k++w+++l Pbr036818.1 74 TPD-EELILRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114 555.577889********.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.303 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-26 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 21.479 | 65 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-12 | 69 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 71 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-13 | 74 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.07E-10 | 74 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLNMGRAPCC SKVGLHRGSW TAREDNLLIQ YINSHGEGRW SSLPENAGLL RCGKSCKLRW 60 MNNLRPGIKR GNITPDEELI LRLHALLGNR WSLIAGRLPG RTDNEIKNYW NTHLSRRFKN 120 PTTGKGTEKQ SSTRKRASKP QKRML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 15 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009359589.1 | 3e-97 | PREDICTED: LOW QUALITY PROTEIN: transcription repressor MYB6-like | ||||
Swissprot | O22264 | 2e-57 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | M5WPN0 | 1e-70 | M5WPN0_PRUPE; Uncharacterized protein | ||||
STRING | VIT_15s0046g00170.t01 | 4e-68 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 1e-58 | myb domain protein 7 |